M. Waroquier

Application of molecular cluster models to study the amino acid L-α-alanine and its derived radicals in the crystalline state

E. Pauwels, V. Van Speybroeck, M. Waroquier
International Journal of Quantum Chemistry
91(3), 511-516
2003
A1

Abstract 

In this study, molecular cluster methods are used to simulate the crystalline environment of l-α-alanine. Two clusters are constructed based on neutron diffraction data, containing 7 and 14 molecules respectively. The geometry of a central alanine molecule is optimised at several levels of theory, while the surrounding molecules in the cluster are kept fixed in space. By evaluating the difference between the optimised and the experimental geometries, an assessment is made of the different levels of theory used. These vary from semi-empirical to full DFT-B3LYP treatments of the cluster. Special attention is paid to hybrid methods, involving the ONIOM scheme. These cluster methods are then used to study a radiation-induced radical of alanine, since they allow unbiased geometry optimisation of the radical under study. The influence of the theoretical treatment is considered on several calculated hyperfine coupling constants. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2003

Algorithm to derive exact exchange-correlation potentials from correlated densities in atoms

K. Peirs, D. Van Neck, M. Waroquier
Physical Review A
67 (1), 012505
2003
A1

Abstract 

A simple algorithm is presented to derive accurately the exchange-correlation potential in the density functional theory (DFT) from the electron density. The method, which can be used with any physically acceptable density as input, is applied here to the densities in atoms obtained from high-level Green’s function calculations. The resulting potentials show the correct asymptotic behavior and the characteristic intershell peaks. We illustrate the possible use of these potentials in fitting procedures for new functionals, by investigating the HCTH functional [F. A. Hamprecht, A. J. Cohen, D. J. Tozer, and N. C. Handy, J. Chem. Phys. 109, 6264 (1998)]. The potentials derived from Green’s function one-body densities provide a microscopic foundation for present-day functionals in DFT, and may therefore be helpful in the ultimate goal of constructing functionals on a fully ab initio basis.

Electromagnetic interaction in chiral quantum hadrodynamics and decay of vector and axial-vector mesons

A.Y. Korchin, D. Van Neck, M. Waroquier
Physical Review C
67 (1), 015207
2003
A1

Abstract 

The chiral invariant quantum hadrodynamics (QHD) III model of Serot and Walecka is applied in the calculation of some meson properties. The electromagnetic interaction is included by extending the symmetry of the model to the local U(1)×SU(2)R×SU(2)L group. The minimal and nonminimal contributions to the electromagnetic Lagrangian are obtained in a new representation of QHD-III. Strong decays of the axial-vector meson, a1→πρ,a1→πσ, and the electromagnetic decays ρ⃗ππγ,a1→πγ, and ρ⃗πγ are calculated. The low-energy parameters for the π-π scattering are calculated in the tree-level approximation. The effect of the auxiliary Higgs bosons, introduced in QHD-III in order to generate masses of the vector and axial-vector mesons via the Higgs mechanism, is studied as well. This is done on the tree level for π-π scattering and on the level of one-loop diagrams for the a1→πγ decay. It is demonstrated that the model successfully describes some features of meson phenomenology in the nonstrange sector.

Density-functional study of S2- defects in alkali halides

F. Stevens, H. Vrielinck, F. Callens, E. Pauwels, M. Waroquier
Physical Review B
66 (13), 134103
2002
A1

Abstract 

Density-functional methods, as implemented in the Amsterdam Density Functional program, are used to calculate the electron paramagnetic resonance (EPR) and electron nuclear double resonance (ENDOR) parameters of the S2- defect in a halide monovacancy in various alkali halides (MZ:M=Na, K, Rb and Z=Cl, Br, I) lattices. The calculations were performed on cluster in vacuo models for the defect and its lattice surroundings, involving up to 88 atoms in order to limit boundary effects. For all MZ lattices, the calculated g and 33S hyperfine tensors of the S2- molecular ion are in very good agreement with the available EPR data, explicitly supporting the monovacancy model for the defect. In addition, computational results for the principal superhyperfine and quadrupole values and axes of the nearest shells of M+ and Z- ions are compared with experimental ENDOR data. The merits and shortcomings of the applied cluster in the vacuo method are critically evaluated.

Tentative Structures for the Radiation-Induced Radicals in Crystalline β-d-Fructose Using Density Functional Theory

E. Pauwels, P. Lahorte, G. Vanhaelewyn, F. Callens, F. De Proft, P. Geerlings, M. Waroquier
Journal of Physical Chemistry A
106 (51), 12370-12375
2002
A1

Abstract 

In this study, density functional theory calculations were used to identify the structure of the radiation-induced radicals in solid state β-d-fructose, using a single molecule approach. Four model radicals were proposed, and the electron paramagnetic resonance (EPR) parameters were calculated for the optimized geometries. These calculated parameters were subsequently compared with those of two radical species, observed in an experimental EPR and electron nuclear double resonance study on irradiated fructose (Vanhaelewyn, G.; Lahorte, P.; De Proft, F.; Mondelaers, W.; Geerlings, P.; Callens, F. Phys. Chem. Chem. Phys. 2001, 3, 1729). On the basis of this preliminary comparison, three model structures were rejected. By varying the main degree of freedom of the remaining model, a number of conformations were obtained that yielded isotropic and anisotropic hyperfine tensor components in close agreement with experimental results. To disentangle between these possible conformers, a detailed study was made of the hyperfine tensor eigenvectors. One conformation was found to be in close agreement with the experimental measurement of the hyperfine tensor of the two observed radical species. It was concluded that these experimental species are in fact manifestations of one and the same radical, with a structure conforming to our model but with slightly altered conformations.

Thermodegradable polycarbonates: Effect of substituents on the degradation temperature

Y. Martele, V. Van Speybroeck, M. Waroquier, E. Schacht
E-Polymers
049
2002
A1

Abstract 

The thermal degradation process of some new polycarbonates is investigated from an experimental and theoretical point of view, in order to obtain insight into the microscopic aspects that influence the reaction mechanism and the process of thermolysis. In particular, attention is focussed on the influence of the type of substituents in the polymer chain on the degradation temperature. A series of novel polycarbonates were designed differing from each other by the groups attached at the alpha and beta carbon atoms. Thermal behavior was characterized by thermogravimetrical analyses. The polymers undergo rapid and complete thermolysis at different degradation temperatures depending on the structure. The degradation products were separated by gas chromatography and analyzed by mass spectroscopy. The ratio of formed dienes in the product distribution depends on the heating rate. Furthermore, density functional theory calculations were performed on a series of model compound systems for the polycarbonates under study, in particular carbonate systems differing by the groups attached at the alpha and beta carbons. The study proves that the thermal degradation route can be controlled by tailoring the polymer backbone structure. Moreover, ab initio calculations provide further insight into the microscopic ingredients that govern the degradation process and associated reaction rates.

Compton Scattering on the Proton and Light Nuclei in the \Delta-Resonance Region

L. Van Daele, D. Van Neck, M. Waroquier, A.Y. Korchin
Acta Physica Polonica B
33(3), 847-871
2002
A1

Abstract 

Microscopic calculations of Compton scattering on the free proton and light nuclei are presented. For the description of Compton scattering on the proton the conventional K-matrix approach and the ``Dressed K-Matrix'' model are introduced. The latter approach can be used to calculate polarizabilities as well as Compton scattering for photon energies upto 1 GeV since it obeys the symmetry properties which are appropriate in the different energy regions. In particular, crossing symmetry, gauge invariance and unitarity are satisfied. The extent of violation of analyticity (causality) is used as an expansion parameter. Coherent Compton scattering on light nuclei at 200--300 MeV is studied in the impulse approximation and is shown to be a sensitive probe of the in-medium properties of the \Delta -resonance. Modifications of the properties of the \Delta-resonance due to the nuclear medium are accounted for through the self-energy operator of the \Delta. The dominant medium effects such as the Pauli blocking effects in the decay width, effective nucleon mass and particle--hole excitations in the pion propagator are consistently included in nuclear matter.

Ab Initio Studies of Thermal Syn-Elimination Reactions in Carbonates:  Effect of Structure on Reactivity

V. Van Speybroeck, Y. Martele, E. Schacht, M. Waroquier
Journal of Physical Chemistry A
106 (51), 12370–12375
2002
A1

Abstract 

Thermal elimination reactions in carbonates are investigated from a theoretical point of view with density functional theory methods to obtain insight into the reaction mechanism and structural factors that influence the kinetics. Carbonate systems are good model systems for the kinetics of thermal degradable polycarbonates. Special attention is given to the influence of para-substituents placed either at Cα or Cβ. The results enable prediction of ρ values of the Hammett equation and confirm earlier experimental data.

The Electronegativity Equalization Method I: Parametrization and Validation for Atomic Charge Calculations

P. Bultinck, W. Langenaeker, P. Lahorte, F. De Proft, P. Geerlings, M. Waroquier, J.P. Tollenaere
Journal of Physical Chemistry A
106(34), 7887-7894
2002
A1

Abstract 

The applicability of the electronegativity equalization method (EEM) is investigated for the fast calculation of atomic charges in organic chemistry, with an emphasis on medicinal chemistry. A large training set of molecules was composed, comprising H, C, N, O, and F, covering a wide range of medicinal chemistry. Geometries and atomic charges are calculated at the B3LYP/6-31G* level, and from the calculated charges, effective electronegativity and hardness values are calibrated in a weighted least-squares fashion. The optimized parameter set is compared to other theoretical as well as experimental values and origins of the differences discussed. An approach toward extension of EEM to include new atoms is introduced. The quality of the EEM charges is assessed by comparison with B3LYP/6-31G* charges calculated for a set of medicinal molecules, not contained in the training set. The EEM approach is found to be a very powerful way to obtain ab initio quality charges without the computational cost of the ab initio approach.

The Kinetics of Cyclization Reactions on Polyaromatics from First Principles

V. Van Speybroeck, M-F. Reyniers, G.B. Marin, M. Waroquier
ChemPhysChem
3 (10), 863–870
2002
A1

Abstract 

Ab initio density functional theory calculations are presented on cyclization reactions of polyaromatics involved in coke formation during the thermal cracking of hydrocarbons. During coke formation, cyclization can take place at various sites, differing from each other by the local polyaromatic structure. This local structure also determines the minimum number of carbon atoms that must be added to allow the formation of a new ring. Kinetic parameters are calculated for the various ring-closure reactions by means of transition state theory. The activation energy is largely affected by the local structure of the polycyclic aromatic hydrocarbon, whereas the frequency factor varies significantly in terms of the length of the attached alkyl chain. The calculations, as presented, give a microscopic insight into the mechanisms that contribute to barrier formation and to the value of the frequency factor. The relative importance of cyclization at different sites, under conditions typical for an industrial cracking unit, is studied on the basis of the calculated rate constants at various temperatures. The results suggest that the nature of coke formation is autocatalytic: the larger the macroradicals, the faster the subsequent reactions that lead to further growth of the polyaromatic surface. This type of calculation is the first step towards the development of structural relations for the kinetic parameters in terms of the local structure of the coke matrix.

DOI 

http://dx.doi.org/10.1002/1439-7641(20021018)3:103.0.CO;2-P

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